Recipes | Breads, Muffins & Biscuits

FODMAP IT!™ Low FODMAP Apple Muffins


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Let’s Make Low FODMAP Apple Muffins

Apples? Yes, apples! The August 2018 Monash University Low FODMAP Diet Smartphone App update has told us that we can enjoy Granny Smith apples and Pink Lady apples in amounts of 20 grams.

Check out our article Are Apples Low FODMAP to see what this amount looks like, which will be very helpful for you as you integrate apples into your diet.

closeup low FODMAP apple muffins on aqua plate

Low FODMAP Apple Muffins for Everyone

When we discovered that we could have small amounts of apples, the first recipe we thought of was low FODMAP apple muffins – for so many reasons!

  • They are easy to make
  • We like them for breakfast and/or snacks
  • Muffins are portable
  • They freeze well
  • They are sweet – but not too sweet
  • And they are a great way to showcase a small amount of apples, keeping the serving size low FODMAP and appropriate for even the Elimination phase.
low fodmap apple muffins on an aqua plate
The top three muffins (towards the left) are plain, without any topping. The bottom two (towards the right) feature a cinnamon laden, sugary streusel.

Pink Lady & Granny Smith – Peeled or Unpeeled

As of now, the two apples that Monash University has tested are Pink Lady and Granny Smith.They have tested as low FODMAP in 20 grams amounts, both peeled and unpeeled.

You can use either for this recipe, but I am partial to the Pink Lady.

The recipe is easy to make. It is simply a matter of whisking together a dry mixture and then a wet mixture separately, and then combining them.

Low FODMAP apple muffin, cut open

To Top or Not to Top

There is an optional sugary, crumbly streusel topping. I have shown you both muffins in the images. It’s great to have choices while following the diet!

Keep it Even

My favorite trick for making bakery-worthy muffins is to use a food-disher, which you might know as an ice c ream scoop.

Using a ¼ cup (60 ml) size scoop will help you divide the batter very equally, ensuring that all the muffins come out the same size.

Not only will they look more professional, but they will also bake more evenly and the yield will be consistent.

This recipe was inspired by a whole-wheat version by Pinch of Yum.

For more muffin lusciousness check out our Glorious Morning Muffins, Low FODMAP Corn Bread Muffins, Apple Gouda Muffins and our Everybody’s Favorite Muffin, which are Certified Low FODMAP by Monash University for starters.

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closeup low FODMAP apple muffins on aqua plate
3.83 from 17 votes

FODMAP IT!™ Low FODMAP Apple Muffins

These Low FODMAP Apple Muffins are super simple to make and feature a low FODMAP amount of apples, per Monash University's research. Try to eat just one!

Low FODMAP Serving Size Info: Makes 12 muffins; serving size 1 muffin

Makes: 12 muffins
Prep Time: 5 minutes
Cook Time: 20 minutes
Total Time: 25 minutes
Author: Dédé Wilson


Topping - Optional:



  1. Position rack in middle of oven. Preheat oven to 350°F/180°C. Coat the insides and to of 12 muffin wells with nonstick spray; set aside.
  2. For the Topping: If making, simply stir together all of the Topping ingredients in a small bowl until well combined; set aside. It will look like a dark, cinnamony paste.

  3. For the Muffins: Combine the milk and lemon juice in a medium bowl and allow to sit and thicken for 5 minutes (you are making a soured milk, like buttermilk). Whisk in the oil, brown sugar, egg and vanilla until smooth and well mixed.

  4. In a separate medium bowl whisk together the flour, baking powder and soda, salt and spices until aerated and combined. Make a well in the center and pour in the wet mixture and stir until a few floury streaks remain, then fold in chopped apple.
  5. Divide mixture into prepared pan(s). Scatter topping on top of muffins, if using. Bake for about 15 to 20 minutes or until a toothpick shows a few crumbs clinging (but just a few). Cool on rack for at least 5 minutes, then unmold directly onto rack. Muffins can be served warm or at room temp. Store in airtight container for up to 3 days. After cooling they may also be placed in heavy zip-top bags and frozen for up to a month. They defrost very quickly.


If You Can Tolerate
  • Fructans: If you have passed the fructan wheat challenge, you can use regular all-purpose wheat flour. Use weight amounts for best results with this substitution.
Course: Breakfast, Snack
Cuisine: American


Calories: 236kcal | Carbohydrates: 37g | Protein: 3g | Fat: 9g | Saturated Fat: 1g | Sodium: 223mg | Fiber: 1g | Sugar: 13g | Vitamin C: 0.5mg | Calcium: 1mg

All nutritional information is based on third-party calculations and should be considered estimates. Actual nutritional content will vary with brands used, measuring methods, portion sizes and more. For a more detailed explanation, please read our article Understanding The Nutrition Panel Within Our Recipes.